STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH51732.1Hypothetical protein. (71 aa)    
Predicted Functional Partners:
envZ_1
Osmolarity sensor protein EnvZ.
 
     0.921
CUH51728.1
Cytochrome c-type biogenesis protein CcmI.
 
     0.884
ompR_2
Transcriptional regulatory protein OmpR.
 
     0.860
CUH51885.1
EF hand.
 
     0.773
CUH51723.1
Cytochrome c556.
  
     0.709
ccmH_1
Cytochrome c-type biogenesis protein CcmH precursor; Possible subunit of a heme lyase.
 
     0.658
cycY
Cytochrome c biogenesis protein CycY.
 
     0.656
CUH51737.1
Cytochrome c556.
 
     0.635
dsbD_1
Thiol:disulfide interchange protein DsbD precursor.
 
     0.623
CUH51754.1
Molybdopterin biosynthesis-like protein MoeZ.
 
     0.611
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.