STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsbD_2Thiol:disulfide interchange protein DsbD precursor. (708 aa)    
Predicted Functional Partners:
cycY
Cytochrome c biogenesis protein CycY.
 
 
 0.963
CUH51323.1
Thioredoxin 2.
  
 
 0.930
dsbE
Cytochrome c biogenesis protein CcmG.
  
 
 0.930
tlpA
Cytochrome c biogenesis protein TlpA.
  
 
 0.930
msrB
Peptide methionine sulfoxide reductase MsrB.
   
 
 0.921
msrA3
Peptide methionine sulfoxide reductase MsrA 3; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
   
 
 0.901
msrA2
Peptide methionine sulfoxide reductase MsrA 2; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
   
 
 0.901
CUH51753.1
Protein-disulfide isomerase.
 
 
 0.844
CUH51754.1
Molybdopterin biosynthesis-like protein MoeZ.
 
     0.821
bdbD_2
Thiol-disulfide oxidoreductase D.
 
 
 0.713
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.