STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
parB_3Putative chromosome-partitioning protein ParB. (660 aa)    
Predicted Functional Partners:
CUH51788.1
Hypothetical protein.
 
     0.879
traC_2
DNA primase TraC.
 
     0.836
CUH51796.1
Hypothetical protein.
 
     0.827
CUH51802.1
Hypothetical protein.
 
     0.773
soj_2
Sporulation initiation inhibitor protein soj.
 
 
 0.761
CUH51846.1
Hypothetical protein.
  
     0.754
CUH51847.1
Hypothetical protein.
  
     0.741
soj_1
Sporulation initiation inhibitor protein soj.
  
 
 0.696
CUH52452.1
ParA-like protein.
  
 
 0.696
CUH51806.1
Type IV secretion system T-DNA border endonuclease VirD2.
  
     0.678
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.