STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH51817.1Protein of unknown function, DUF. (151 aa)    
Predicted Functional Partners:
CUH51816.1
Glycyl-glycine endopeptidase ALE-1 precursor.
 
     0.807
CUH51814.1
Hypothetical protein.
       0.773
CUH51815.1
SCO1/SenC.
       0.773
bdbC_1
Thiol-disulfide oxidoreductase C; Belongs to the DsbB family.
 
     0.738
bdbD_4
Thiol-disulfide oxidoreductase D.
   
   0.729
CUH51811.1
SCO1/SenC.
       0.701
lspA_1
Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
       0.526
zntR_3
Zn(II)-responsive regulator of zntA.
       0.481
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.