STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH51835.1Type IV secretion system protein VirB11. (328 aa)    
Predicted Functional Partners:
virB9_2
Type IV secretion system protein virB9 precursor.
  
 0.959
ptlG_2
Pertussis toxin liberation protein G.
  
 0.958
CUH52285.1
Flp pilus assembly protein TadB.
 
  
 0.913
CUH51838.1
Type IV secretion system protein VirB8.
 
     0.912
virB4_2
Type IV secretion system protein virB4.
  
 0.907
CUH52286.1
Flp pilus assembly protein TadB.
 
  
 0.901
CUH51832.1
TrbL/VirB6 plasmid conjugal transfer protein.
 
     0.900
CUH51839.1
P-type DNA transfer protein VirB5.
 
    0.884
slt_4
Soluble lytic murein transglycosylase precursor.
 
    0.861
CUH52279.1
Flp pilus assembly protein CpaB.
 
  
 0.825
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.