Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CUH51863.1 | CUH51866.1 | SHM7688_01302 | SHM7688_01305 | SCO1/SenC. | Hypothetical protein. | 0.929 |
CUH51863.1 | CUH51867.1 | SHM7688_01302 | SHM7688_01306 | SCO1/SenC. | SCO1/SenC. | 0.740 |
CUH51863.1 | ctaC | SHM7688_01302 | SHM7688_02305 | SCO1/SenC. | Cytochrome c oxidase subunit 2 precursor; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). | 0.923 |
CUH51863.1 | nlpD_2 | SHM7688_01302 | SHM7688_01307 | SCO1/SenC. | Murein hydrolase activator NlpD precursor. | 0.839 |
CUH51866.1 | CUH51863.1 | SHM7688_01305 | SHM7688_01302 | Hypothetical protein. | SCO1/SenC. | 0.929 |
CUH51866.1 | CUH51867.1 | SHM7688_01305 | SHM7688_01306 | Hypothetical protein. | SCO1/SenC. | 0.947 |
CUH51866.1 | ctaC | SHM7688_01305 | SHM7688_02305 | Hypothetical protein. | Cytochrome c oxidase subunit 2 precursor; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). | 0.907 |
CUH51866.1 | ctaDII | SHM7688_01305 | SHM7688_01681 | Hypothetical protein. | Cytochrome c oxidase subunit 1-beta; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. | 0.908 |
CUH51866.1 | ctaE | SHM7688_01305 | SHM7688_02309 | Hypothetical protein. | Cytochrome c oxidase subunit 3. | 0.906 |
CUH51866.1 | nlpD_2 | SHM7688_01305 | SHM7688_01307 | Hypothetical protein. | Murein hydrolase activator NlpD precursor. | 0.915 |
CUH51866.1 | petA_1 | SHM7688_01305 | SHM7688_01059 | Hypothetical protein. | Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | 0.913 |
CUH51866.1 | petA_2 | SHM7688_01305 | SHM7688_01217 | Hypothetical protein. | Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | 0.915 |
CUH51866.1 | petB | SHM7688_01305 | SHM7688_01060 | Hypothetical protein. | Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | 0.907 |
CUH51866.1 | sodC | SHM7688_01305 | SHM7688_02236 | Hypothetical protein. | Superoxide dismutase [Cu-Zn] precursor; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family. | 0.895 |
CUH51867.1 | CUH51863.1 | SHM7688_01306 | SHM7688_01302 | SCO1/SenC. | SCO1/SenC. | 0.740 |
CUH51867.1 | CUH51866.1 | SHM7688_01306 | SHM7688_01305 | SCO1/SenC. | Hypothetical protein. | 0.947 |
CUH51867.1 | ctaC | SHM7688_01306 | SHM7688_02305 | SCO1/SenC. | Cytochrome c oxidase subunit 2 precursor; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). | 0.921 |
CUH51867.1 | nlpD_2 | SHM7688_01306 | SHM7688_01307 | SCO1/SenC. | Murein hydrolase activator NlpD precursor. | 0.902 |
ctaC | CUH51863.1 | SHM7688_02305 | SHM7688_01302 | Cytochrome c oxidase subunit 2 precursor; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). | SCO1/SenC. | 0.923 |
ctaC | CUH51866.1 | SHM7688_02305 | SHM7688_01305 | Cytochrome c oxidase subunit 2 precursor; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). | Hypothetical protein. | 0.907 |
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