STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
iolB5-deoxy-glucuronate isomerase. (268 aa)    
Predicted Functional Partners:
iolD
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; Belongs to the TPP enzyme family.
 
 
 0.999
iolC_1
5-dehydro-2-deoxygluconokinase.
 
 0.999
iolE
Inosose dehydratase.
  
 0.997
idhA
Inositol 2-dehydrogenase.
 
  
 0.938
afr_2
1,5-anhydro-D-fructose reductase.
 
  
 0.929
rbsA_2
Ribose import ATP-binding protein RbsA.
 
  
 0.928
xylH
Xylose transport system permease protein XylH; Belongs to the binding-protein-dependent transport system permease family.
 
    0.899
CUH52112.1
ABC-type sugar transport system, periplasmic component.
 
  
 0.835
ybbH
Putative HTH-type transcriptional regulator YbbH.
 
   
 0.828
iolC_2
5-dehydro-2-deoxygluconokinase.
  
 
 0.818
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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