STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsbVAnti-anti-sigma-B factor; Belongs to the anti-sigma-factor antagonist family. (109 aa)    
Predicted Functional Partners:
flgH
Basal body L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
   
    0.999
CUH51373.1
Chemotactic signal-response protein CheL.
   
    0.999
afsQ1
Transcriptional regulatory protein AfsQ1.
 
 0.999
flgE
Flagellar hook protein FlgE.
   
    0.999
btrW
Serine/threonine-protein kinase BtrW.
 
 0.999
CUH53222.1
Heme NO binding protein.
 
    0.999
CUH51366.1
Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
   
    0.998
luxQ_2
Autoinducer 2 sensor kinase/phosphatase LuxQ.
  
 
 0.991
fliG
Flagellar motor switch protein FliG.
  
   0.980
luxQ_6
Autoinducer 2 sensor kinase/phosphatase LuxQ.
  
 
 0.975
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.