STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfcG_3Disulfide-bond oxidoreductase YfcG. (249 aa)    
Predicted Functional Partners:
garB
Glutathione amide reductase; Maintains high levels of reduced glutathione.
 
  
 0.855
tdcG
L-serine dehydratase TdcG; Belongs to the iron-sulfur dependent L-serine dehydratase family.
       0.791
yfcG_1
Disulfide-bond oxidoreductase YfcG; Belongs to the GST superfamily.
  
  
  0.747
nagL_1
Maleylpyruvate isomerase.
  
  
  0.721
gshB
Glutathione synthetase; Belongs to the prokaryotic GSH synthase family.
  
  
 0.718
gstB_2
Glutathione S-transferase GST-6.0.
  
  
  0.715
nagL_2
Maleylpyruvate isomerase; Belongs to the GST superfamily.
  
  
 
0.682
CUH53667.1
Maleylacetoacetate isomerase.
  
  
  0.672
CUH54332.1
Glutathione S-transferase.
     
 0.653
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.640
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.