STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH52286.1Flp pilus assembly protein TadB. (324 aa)    
Predicted Functional Partners:
CUH52285.1
Flp pilus assembly protein TadB.
 
  
0.999
minD_2
Cell division inhibitor MinD.
 
  
 0.991
CUH52279.1
Flp pilus assembly protein CpaB.
 
  
 0.976
CUH52284.1
Putative conjugal transfer proteinc/MT3759.
 
  
 0.975
outD
Pectic enzymes secretion protein OutD; Belongs to the bacterial secretin family.
 
  
 0.960
CUH52290.1
Hypothetical protein.
 
    0.951
CUH51369.1
Flagellar biosynthesis repressor FlbT.
   
    0.930
CUH52287.1
Type IV pilus biogenesis/stability protein PilW.
 
  
 0.926
CUH52288.1
Type IV pilus biogenesis/stability protein PilW.
 
  
 0.924
CUH51685.1
Type IV secretion system protein VirB11.
 
  
 0.902
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.