STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araBL-arabinolactonase. (286 aa)    
Predicted Functional Partners:
CUH52342.1
2-keto-3-deoxy-galactonokinase.
 
     0.886
ilvD
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
    
 0.868
fabG_4
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
 
 
  0.782
xylH
Xylose transport system permease protein XylH; Belongs to the binding-protein-dependent transport system permease family.
 
  
  0.587
xylB
Xylulose kinase.
  
 
 0.586
gntK
Thermoresistant gluconokinase.
    
 0.582
yliI
Soluble aldose sugar dehydrogenase YliI precursor.
    
 0.578
dgoD
D-galactonate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
 0.574
tdh
L-threonine 3-dehydrogenase.
  
 
 0.559
rbsA_2
Ribose import ATP-binding protein RbsA.
    
 0.557
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.