STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacFD-alanyl-D-alanine carboxypeptidase DacF precursor; Belongs to the peptidase S11 family. (462 aa)    
Predicted Functional Partners:
CUH52383.1
dUMP phosphatase.
       0.658
ftsI
Peptidoglycan synthase FtsI.
 
 
 0.646
spoVD
Sporulation-specific penicillin-binding protein.
 
 0.573
mreB
Rod shape-determining protein MreB.
 
  
 0.567
gshAB
Gamma-GCS-GS.
  
  
 0.566
pbpG_1
Penicillin-binding protein 2D.
  
 
 0.528
ftsK
DNA translocase FtsK.
 
   
 0.474
tig
Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.
  
    0.469
rsmC
Ribosomal RNA small subunit methyltransferase C; Belongs to the methyltransferase superfamily.
  
    0.454
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
 
   
 0.446
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.