STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fadA_23-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (400 aa)    
Predicted Functional Partners:
fadB_1
Fatty acid oxidation complex subunit alpha; Belongs to the enoyl-CoA hydratase/isomerase family.
 0.998
fadJ
Fatty acid oxidation complex subunit alpha.
 
 0.997
fadB_2
Fatty acid oxidation complex subunit alpha; Belongs to the enoyl-CoA hydratase/isomerase family.
 0.997
pksG
Polyketide biosynthesis 3-hydroxy-3-methylglutaryl-ACP synthase PksG.
  
 0.967
mmgB
Putative 3-hydroxybutyryl-CoA dehydrogenase.
 0.910
cmdD
Chondramide synthase cmdD.
  
 0.839
Acd_2
Glutaryl-CoA dehydrogenase.
  
  0.831
acdA_4
Acyl-CoA dehydrogenase.
  
  0.806
acdA_5
Acyl-CoA dehydrogenase.
  
  0.793
CUH52573.1
Putative enoyl-CoA hydratase 1.
 
  0.782
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.