STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acdA_5Acyl-CoA dehydrogenase. (369 aa)    
Predicted Functional Partners:
Acd_2
Glutaryl-CoA dehydrogenase.
     0.994
Acd_1
Glutaryl-CoA dehydrogenase.
 
     0.976
fadB_1
Fatty acid oxidation complex subunit alpha; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.913
fadB_2
Fatty acid oxidation complex subunit alpha; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.911
fadJ
Fatty acid oxidation complex subunit alpha.
  
 0.908
etfA
Electron transfer flavoprotein large subunit.
 
 0.853
etfB
Electron transfer flavoprotein small subunit.
 
 
 0.816
fadA_2
3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
  0.793
CUH52643.1
Long-chain-fatty-acid--CoA ligase FadD15.
  
  0.766
cmdD
Chondramide synthase cmdD.
  
 0.743
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.