STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
virB4_3Type IV secretion system protein virB4. (765 aa)    
Predicted Functional Partners:
virB9_3
Type IV secretion system protein virB9 precursor.
 
 0.988
ptlG_3
Pertussis toxin liberation protein G.
 
 
 0.988
CUH52681.1
Type IV secretion system protein VirB8.
 
 
 0.986
CUH52676.1
Type IV secretion system protein VirB3.
 
 
 0.978
CUH52686.1
TrbL/VirB6 plasmid conjugal transfer protein.
 
 
 0.978
CUH52684.1
Type IV secretion system protein VirB11.
 
  
 0.957
virB9_1
Type IV secretion system protein virB9 precursor.
 
 0.952
virB9_2
Type IV secretion system protein virB9 precursor.
 
 0.952
ptlG_1
Pertussis toxin liberation protein G.
 
 
 0.950
ptlG_2
Pertussis toxin liberation protein G.
 
 
 0.950
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
Server load: low (30%) [ZH]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.