STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH52754.1Ornithine cyclodeaminase. (317 aa)    
Predicted Functional Partners:
tdcB_1
L-threonine dehydratase catabolic TdcB.
 
     0.822
putA
Bifunctional protein PutA.
  
 
 0.796
arcA
Arginase; Belongs to the arginase family.
 
  
 0.708
CUH52755.1
YheO-like PAS domain protein.
 
  
 0.688
CUH50855.1
Proline racemase; Belongs to the proline racemase family.
 
  
 0.657
CUH50853.1
4-hydroxyproline epimerase; Belongs to the proline racemase family.
 
  
 0.641
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
   
 
 0.640
ldc
Lysine/ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 
  0.631
alr
Alanine racemase, biosynthetic; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
     
 0.618
argE_3
Acetylornithine deacetylase.
    
  0.602
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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