Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CUH52822.1 | CUH52838.1 | SHM7688_02269 | SHM7688_02285 | Hypothetical protein. | Glutaredoxin 3. | 0.831 |
CUH52822.1 | nrdI | SHM7688_02269 | SHM7688_00145 | Hypothetical protein. | Putative NrdI-like protein; Probably involved in ribonucleotide reductase function. | 0.721 |
CUH52822.1 | ribBA | SHM7688_02269 | SHM7688_02708 | Hypothetical protein. | Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family. | 0.679 |
CUH52838.1 | CUH52822.1 | SHM7688_02285 | SHM7688_02269 | Glutaredoxin 3. | Hypothetical protein. | 0.831 |
CUH52838.1 | blh_1 | SHM7688_02285 | SHM7688_01058 | Glutaredoxin 3. | Beta-lactamase hydrolase-like protein. | 0.577 |
CUH52838.1 | nrdE2 | SHM7688_02285 | SHM7688_00146 | Glutaredoxin 3. | Ribonucleoside-diphosphate reductase subunit alpha 2; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. | 0.831 |
CUH52838.1 | nrdI | SHM7688_02285 | SHM7688_00145 | Glutaredoxin 3. | Putative NrdI-like protein; Probably involved in ribonucleotide reductase function. | 0.671 |
CUH52838.1 | nrdJ | SHM7688_02285 | SHM7688_02422 | Glutaredoxin 3. | Vitamin B12-dependent ribonucleotide reductase; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | 0.831 |
CUH52838.1 | nrdZ | SHM7688_02285 | SHM7688_03905 | Glutaredoxin 3. | Ribonucleoside-diphosphate reductase NrdZ; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | 0.831 |
CUH52838.1 | ribBA | SHM7688_02285 | SHM7688_02708 | Glutaredoxin 3. | Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family. | 0.661 |
CUH52838.1 | rutC | SHM7688_02285 | SHM7688_02286 | Glutaredoxin 3. | Putative aminoacrylate peracid reductase RutC. | 0.533 |
CUH52838.1 | secB | SHM7688_02285 | SHM7688_00899 | Glutaredoxin 3. | Protein-export protein SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA. | 0.604 |
CUH52838.1 | selD | SHM7688_02285 | SHM7688_03162 | Glutaredoxin 3. | Selenide, water dikinase. | 0.676 |
blh_1 | CUH52838.1 | SHM7688_01058 | SHM7688_02285 | Beta-lactamase hydrolase-like protein. | Glutaredoxin 3. | 0.577 |
blh_1 | selD | SHM7688_01058 | SHM7688_03162 | Beta-lactamase hydrolase-like protein. | Selenide, water dikinase. | 0.757 |
nrdE2 | CUH52838.1 | SHM7688_00146 | SHM7688_02285 | Ribonucleoside-diphosphate reductase subunit alpha 2; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. | Glutaredoxin 3. | 0.831 |
nrdE2 | nrdI | SHM7688_00146 | SHM7688_00145 | Ribonucleoside-diphosphate reductase subunit alpha 2; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. | Putative NrdI-like protein; Probably involved in ribonucleotide reductase function. | 0.985 |
nrdE2 | nrdJ | SHM7688_00146 | SHM7688_02422 | Ribonucleoside-diphosphate reductase subunit alpha 2; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. | Vitamin B12-dependent ribonucleotide reductase; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | 0.860 |
nrdE2 | nrdZ | SHM7688_00146 | SHM7688_03905 | Ribonucleoside-diphosphate reductase subunit alpha 2; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. | Ribonucleoside-diphosphate reductase NrdZ; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | 0.868 |
nrdE2 | ribBA | SHM7688_00146 | SHM7688_02708 | Ribonucleoside-diphosphate reductase subunit alpha 2; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. | Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family. | 0.679 |
page 1 of 3