Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CUH52976.1 | CUH52978.1 | SHM7688_02423 | SHM7688_02425 | Polyhydroxyalkanoate depolymerase, intracellular. | Hypothetical protein. | 0.892 |
CUH52976.1 | CUH52979.1 | SHM7688_02423 | SHM7688_02426 | Polyhydroxyalkanoate depolymerase, intracellular. | Polyhydroxyalkanoate synthesis repressor PhaR. | 0.874 |
CUH52976.1 | CUH53144.1 | SHM7688_02423 | SHM7688_02596 | Polyhydroxyalkanoate depolymerase, intracellular. | methylmalonyl-CoA epimerase. | 0.424 |
CUH52976.1 | fur | SHM7688_02423 | SHM7688_03168 | Polyhydroxyalkanoate depolymerase, intracellular. | Ferric uptake regulation protein; Belongs to the Fur family. | 0.456 |
CUH52976.1 | perR | SHM7688_02423 | SHM7688_03542 | Polyhydroxyalkanoate depolymerase, intracellular. | Peroxide operon regulator; Belongs to the Fur family. | 0.456 |
CUH52976.1 | phbC_1 | SHM7688_02423 | SHM7688_01891 | Polyhydroxyalkanoate depolymerase, intracellular. | Poly-beta-hydroxybutyrate polymerase. | 0.943 |
CUH52976.1 | phbC_2 | SHM7688_02423 | SHM7688_02424 | Polyhydroxyalkanoate depolymerase, intracellular. | Poly-beta-hydroxybutyrate polymerase. | 0.978 |
CUH52976.1 | scpA_2 | SHM7688_02423 | SHM7688_02264 | Polyhydroxyalkanoate depolymerase, intracellular. | Methylmalonyl-CoA mutase. | 0.424 |
CUH52978.1 | CUH52976.1 | SHM7688_02425 | SHM7688_02423 | Hypothetical protein. | Polyhydroxyalkanoate depolymerase, intracellular. | 0.892 |
CUH52978.1 | CUH52979.1 | SHM7688_02425 | SHM7688_02426 | Hypothetical protein. | Polyhydroxyalkanoate synthesis repressor PhaR. | 0.916 |
CUH52978.1 | CUH53144.1 | SHM7688_02425 | SHM7688_02596 | Hypothetical protein. | methylmalonyl-CoA epimerase. | 0.457 |
CUH52978.1 | fur | SHM7688_02425 | SHM7688_03168 | Hypothetical protein. | Ferric uptake regulation protein; Belongs to the Fur family. | 0.622 |
CUH52978.1 | perR | SHM7688_02425 | SHM7688_03542 | Hypothetical protein. | Peroxide operon regulator; Belongs to the Fur family. | 0.622 |
CUH52978.1 | phbC_2 | SHM7688_02425 | SHM7688_02424 | Hypothetical protein. | Poly-beta-hydroxybutyrate polymerase. | 0.774 |
CUH52978.1 | scpA_2 | SHM7688_02425 | SHM7688_02264 | Hypothetical protein. | Methylmalonyl-CoA mutase. | 0.457 |
CUH52979.1 | CUH52976.1 | SHM7688_02426 | SHM7688_02423 | Polyhydroxyalkanoate synthesis repressor PhaR. | Polyhydroxyalkanoate depolymerase, intracellular. | 0.874 |
CUH52979.1 | CUH52978.1 | SHM7688_02426 | SHM7688_02425 | Polyhydroxyalkanoate synthesis repressor PhaR. | Hypothetical protein. | 0.916 |
CUH52979.1 | CUH52980.1 | SHM7688_02426 | SHM7688_02427 | Polyhydroxyalkanoate synthesis repressor PhaR. | Bacterial DNA-binding protein. | 0.490 |
CUH52979.1 | CUH53144.1 | SHM7688_02426 | SHM7688_02596 | Polyhydroxyalkanoate synthesis repressor PhaR. | methylmalonyl-CoA epimerase. | 0.457 |
CUH52979.1 | CUH53770.1 | SHM7688_02426 | SHM7688_03231 | Polyhydroxyalkanoate synthesis repressor PhaR. | Patatin-like phospholipase. | 0.538 |
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