Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CUH50820.1 | CUH52535.1 | SHM7688_00249 | SHM7688_01982 | Hypothetical protein. | His-Xaa-Ser repeat protein HxsA. | 0.428 |
CUH50820.1 | alaS_2 | SHM7688_00249 | SHM7688_03203 | Hypothetical protein. | Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.583 |
CUH50820.1 | degP1 | SHM7688_00249 | SHM7688_01703 | Hypothetical protein. | Putative periplasmic serine endoprotease DegP-like precursor; Belongs to the peptidase S1C family. | 0.428 |
CUH50820.1 | degQ | SHM7688_00249 | SHM7688_00362 | Hypothetical protein. | Periplasmic pH-dependent serine endoprotease DegQ precursor. | 0.428 |
CUH50820.1 | glpK | SHM7688_00249 | SHM7688_02481 | Hypothetical protein. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.847 |
CUH50820.1 | yutF | SHM7688_00249 | SHM7688_01400 | Hypothetical protein. | Putative hydrolase YutF. | 0.404 |
CUH52535.1 | CUH50820.1 | SHM7688_01982 | SHM7688_00249 | His-Xaa-Ser repeat protein HxsA. | Hypothetical protein. | 0.428 |
CUH52535.1 | alaS_2 | SHM7688_01982 | SHM7688_03203 | His-Xaa-Ser repeat protein HxsA. | Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.734 |
CUH52535.1 | ankX | SHM7688_01982 | SHM7688_00216 | His-Xaa-Ser repeat protein HxsA. | Phosphocholine transferase AnkX. | 0.428 |
CUH52535.1 | glpK | SHM7688_01982 | SHM7688_02481 | His-Xaa-Ser repeat protein HxsA. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.829 |
CUH52535.1 | plsB | SHM7688_01982 | SHM7688_03781 | His-Xaa-Ser repeat protein HxsA. | Glycerol-3-phosphate acyltransferase. | 0.574 |
alaS_2 | CUH50820.1 | SHM7688_03203 | SHM7688_00249 | Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | Hypothetical protein. | 0.583 |
alaS_2 | CUH52535.1 | SHM7688_03203 | SHM7688_01982 | Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | His-Xaa-Ser repeat protein HxsA. | 0.734 |
alaS_2 | ankX | SHM7688_03203 | SHM7688_00216 | Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | Phosphocholine transferase AnkX. | 0.583 |
alaS_2 | degP1 | SHM7688_03203 | SHM7688_01703 | Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | Putative periplasmic serine endoprotease DegP-like precursor; Belongs to the peptidase S1C family. | 0.715 |
alaS_2 | degQ | SHM7688_03203 | SHM7688_00362 | Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | Periplasmic pH-dependent serine endoprotease DegQ precursor. | 0.715 |
alaS_2 | glpK | SHM7688_03203 | SHM7688_02481 | Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.778 |
ankX | CUH52535.1 | SHM7688_00216 | SHM7688_01982 | Phosphocholine transferase AnkX. | His-Xaa-Ser repeat protein HxsA. | 0.428 |
ankX | alaS_2 | SHM7688_00216 | SHM7688_03203 | Phosphocholine transferase AnkX. | Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.583 |
ankX | degP1 | SHM7688_00216 | SHM7688_01703 | Phosphocholine transferase AnkX. | Putative periplasmic serine endoprotease DegP-like precursor; Belongs to the peptidase S1C family. | 0.526 |
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