Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CUH52478.1 | CUH52841.1 | SHM7688_01924 | SHM7688_02288 | Hypothetical protein. | NADH dehydrogenase. | 0.583 |
CUH52478.1 | CUH53095.1 | SHM7688_01924 | SHM7688_02547 | Hypothetical protein. | Hypothetical protein. | 0.712 |
CUH52478.1 | CUH53162.1 | SHM7688_01924 | SHM7688_02614 | Hypothetical protein. | GcrA cell cycle regulator. | 0.750 |
CUH52478.1 | atpE | SHM7688_01924 | SHM7688_01862 | Hypothetical protein. | Lipid-binding protein; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.766 |
CUH52841.1 | CUH52478.1 | SHM7688_02288 | SHM7688_01924 | NADH dehydrogenase. | Hypothetical protein. | 0.583 |
CUH52841.1 | CUH53095.1 | SHM7688_02288 | SHM7688_02547 | NADH dehydrogenase. | Hypothetical protein. | 0.476 |
CUH52841.1 | CUH53162.1 | SHM7688_02288 | SHM7688_02614 | NADH dehydrogenase. | GcrA cell cycle regulator. | 0.605 |
CUH52841.1 | atpE | SHM7688_02288 | SHM7688_01862 | NADH dehydrogenase. | Lipid-binding protein; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.622 |
CUH52924.1 | CUH53162.1 | SHM7688_02371 | SHM7688_02614 | Chaperone protein DnaJ. | GcrA cell cycle regulator. | 0.743 |
CUH52924.1 | CUH54316.1 | SHM7688_02371 | SHM7688_03786 | Chaperone protein DnaJ. | Dtr system oriT relaxase. | 0.644 |
CUH52924.1 | atpE | SHM7688_02371 | SHM7688_01862 | Chaperone protein DnaJ. | Lipid-binding protein; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.468 |
CUH52924.1 | atpF | SHM7688_02371 | SHM7688_01860 | Chaperone protein DnaJ. | F-type ATPase subunit b; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family. | 0.666 |
CUH53095.1 | CUH52478.1 | SHM7688_02547 | SHM7688_01924 | Hypothetical protein. | Hypothetical protein. | 0.712 |
CUH53095.1 | CUH52841.1 | SHM7688_02547 | SHM7688_02288 | Hypothetical protein. | NADH dehydrogenase. | 0.476 |
CUH53095.1 | CUH53162.1 | SHM7688_02547 | SHM7688_02614 | Hypothetical protein. | GcrA cell cycle regulator. | 0.627 |
CUH53095.1 | atpE | SHM7688_02547 | SHM7688_01862 | Hypothetical protein. | Lipid-binding protein; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.568 |
CUH53162.1 | CUH52478.1 | SHM7688_02614 | SHM7688_01924 | GcrA cell cycle regulator. | Hypothetical protein. | 0.750 |
CUH53162.1 | CUH52841.1 | SHM7688_02614 | SHM7688_02288 | GcrA cell cycle regulator. | NADH dehydrogenase. | 0.605 |
CUH53162.1 | CUH52924.1 | SHM7688_02614 | SHM7688_02371 | GcrA cell cycle regulator. | Chaperone protein DnaJ. | 0.743 |
CUH53162.1 | CUH53095.1 | SHM7688_02614 | SHM7688_02547 | GcrA cell cycle regulator. | Hypothetical protein. | 0.627 |
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