STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kce_13-keto-5-aminohexanoate cleavage enzyme. (304 aa)    
Predicted Functional Partners:
lcdH_2
L-carnitine dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
 
 
 0.912
lcdH_1
L-carnitine dehydrogenase.
 
 
 0.790
scoA
Putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit A.
    
 0.689
scoB
Putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit B.
    
  0.675
cdhR_3
Carnitine catabolism transcriptional activator.
 
     0.627
CUH51302.1
Acetyl coenzyme A synthetase (ADP forming), alpha domain.
 
     0.519
blc
Outer membrane lipoprotein blc precursor; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids.
       0.480
CUH51297.1
Aldolase II superfamily protein.
  
     0.429
acdA_2
Acyl-CoA dehydrogenase.
  
     0.423
tdh
L-threonine 3-dehydrogenase.
    
  0.402
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.