STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH53279.1Putative metal-dependent hydrolase of the TIM-barrel fold protein. (390 aa)    
Predicted Functional Partners:
comC
(2R)-3-sulfolactate dehydrogenase (NADP(+)); Belongs to the LDH2/MDH2 oxidoreductase family.
  
    0.844
CUH50748.1
Heme NO binding protein.
  
  
 0.563
CUH53280.1
Hypothetical protein.
       0.517
stcD
Putative N-methylproline demethylase.
  
 
  0.423
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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