STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH53347.1MarR family protein. (165 aa)    
Predicted Functional Partners:
fliP
Flagellar biosynthetic protein FliP precursor; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.
   
    0.953
CUH52856.1
DNA protecting protein DprA.
   
    0.803
CUH53346.1
Flavinator of succinate dehydrogenase.
 
     0.781
CUH51543.1
DNA utilization protein GntX.
  
    0.722
CUH53345.1
Transcriptional repressor DicA.
       0.704
fliQ
Flagellar biosynthetic protein FliQ.
  
    0.694
CUH51408.1
Hypothetical protein.
  
     0.691
gmr_2
Cyclic di-GMP phosphodiesterase Gmr.
   
    0.641
flgC
Putative proximal rod protein; Belongs to the flagella basal body rod proteins family.
  
    0.632
flgH
Basal body L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
  
    0.623
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.