STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH53354.1DoxX. (174 aa)    
Predicted Functional Partners:
CUH53355.1
Hypothetical protein.
 
  
 0.986
CUH53356.1
Hypothetical protein; Belongs to the UPF0276 family.
 
  
 0.985
CUH53357.1
Putative integral membrane protein.
 
  
 0.960
CUH53358.1
Putative integral membrane protein.
 
  
 0.919
selD
Selenide, water dikinase.
    
 0.583
yedY
Sulfoxide reductase catalytic subunit YedY precursor; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being [...]
  
 
 0.552
sseA
3-mercaptopyruvate sulfurtransferase.
  
 
  0.493
nasE
Assimilatory nitrite reductase [NAD(P)H] small subunit.
    
  0.455
CUH51323.1
Thioredoxin 2.
 
 
 0.428
CUH51210.1
Hypothetical protein.
  
  
  0.416
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.