STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH53394.1Trimethylamine:corrinoid methyltransferase; Belongs to the trimethylamine methyltransferase family. (512 aa)    
Predicted Functional Partners:
gcvT_2
Aminomethyltransferase; Belongs to the GcvT family.
  
     0.720
CUH53751.1
Na(+)-translocating NADH-quinone reductase subunit F.
 
     0.682
apc3_1
Acetophenone carboxylase gamma subunit.
  
     0.660
gcvT_1
Aminomethyltransferase; Belongs to the GcvT family.
  
     0.617
CUH51302.1
Acetyl coenzyme A synthetase (ADP forming), alpha domain.
  
     0.613
metH
Methionine synthase.
  
  0.597
CUH53694.1
Hypothetical protein.
 
     0.592
aruH
Arginine--pyruvate transaminase AruH.
 
     0.548
CUH53573.1
Hypothetical protein.
 
     0.520
acsE
5-methyltetrahydrofolate:corrinoid/iron-sulfur protein co-methyltransferase.
 
     0.471
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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