STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH53463.1Hypothetical protein. (210 aa)    
Predicted Functional Partners:
CUH53464.1
Hypothetical protein.
 
 
   0.999
CUH53466.1
Hypothetical protein.
 
 
   0.999
CUH53459.1
Phage major tail protein, TP901-1 family.
 
 
   0.998
CUH53456.1
Phage gp6-like head-tail connector protein.
 
 
   0.997
CUH53457.1
Bacteriophage head-tail adaptor.
 
 
 
 0.997
CUH53458.1
Hypothetical protein.
 
   0.997
CUH53452.1
Phage portal protein, HK97 family.
 
 
   0.992
CUH53465.1
Putative phage cell wall peptidase, NlpC/P60 family.
 
     0.965
CUH53462.1
Phage tail tape measure protein, lambda family.
 
    0.959
CUH51528.1
Hypothetical protein.
 
 
   0.955
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.