STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH53481.1Putative acyltransferase. (169 aa)    
Predicted Functional Partners:
CUH53482.1
Glycyl-glycine endopeptidase ALE-1 precursor.
 
   
 0.878
bcp_2
Putative peroxiredoxin bcp.
     
 0.672
CUH53483.1
Hypothetical protein.
       0.644
CUH50686.1
Hypothetical protein.
  
     0.584
CUH54044.1
Hypothetical protein.
  
     0.575
CUH51228.1
ABC-type uncharacterized transport system, auxiliary component.
   
    0.574
trpD
Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).
   
    0.562
CUH51026.1
Putative small protein.
  
     0.526
CUH53730.1
Hypothetical protein.
 
     0.520
mreC
Rod shape-determining protein MreC.
 
     0.515
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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