Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
amiC_1 | glnG | SHM7688_00171 | SHM7688_03010 | Aliphatic amidase expression-regulating protein. | Nitrogen regulation protein NR(I). | 0.859 |
amiC_1 | luxQ_2 | SHM7688_00171 | SHM7688_00306 | Aliphatic amidase expression-regulating protein. | Autoinducer 2 sensor kinase/phosphatase LuxQ. | 0.447 |
amiC_1 | luxQ_6 | SHM7688_00171 | SHM7688_01507 | Aliphatic amidase expression-regulating protein. | Autoinducer 2 sensor kinase/phosphatase LuxQ. | 0.496 |
arcB_2 | arcB_4 | SHM7688_00196 | SHM7688_02932 | Aerobic respiration control sensor protein ArcB. | Aerobic respiration control sensor protein ArcB. | 0.999 |
arcB_2 | glnG | SHM7688_00196 | SHM7688_03010 | Aerobic respiration control sensor protein ArcB. | Nitrogen regulation protein NR(I). | 0.886 |
arcB_2 | glnL | SHM7688_00196 | SHM7688_03007 | Aerobic respiration control sensor protein ArcB. | Nitrogen regulation protein NR(II). | 0.805 |
arcB_2 | luxQ_1 | SHM7688_00196 | SHM7688_00004 | Aerobic respiration control sensor protein ArcB. | Autoinducer 2 sensor kinase/phosphatase LuxQ. | 0.999 |
arcB_2 | luxQ_2 | SHM7688_00196 | SHM7688_00306 | Aerobic respiration control sensor protein ArcB. | Autoinducer 2 sensor kinase/phosphatase LuxQ. | 0.999 |
arcB_2 | luxQ_6 | SHM7688_00196 | SHM7688_01507 | Aerobic respiration control sensor protein ArcB. | Autoinducer 2 sensor kinase/phosphatase LuxQ. | 0.999 |
arcB_2 | luxQ_8 | SHM7688_00196 | SHM7688_02274 | Aerobic respiration control sensor protein ArcB. | Autoinducer 2 sensor kinase/phosphatase LuxQ. | 0.999 |
arcB_2 | rpfC_1 | SHM7688_00196 | SHM7688_01508 | Aerobic respiration control sensor protein ArcB. | Sensory/regulatory protein RpfC. | 0.999 |
arcB_2 | yycG | SHM7688_00196 | SHM7688_03009 | Aerobic respiration control sensor protein ArcB. | Sensor histidine kinase YycG. | 0.938 |
arcB_4 | arcB_2 | SHM7688_02932 | SHM7688_00196 | Aerobic respiration control sensor protein ArcB. | Aerobic respiration control sensor protein ArcB. | 0.999 |
arcB_4 | glnG | SHM7688_02932 | SHM7688_03010 | Aerobic respiration control sensor protein ArcB. | Nitrogen regulation protein NR(I). | 0.900 |
arcB_4 | glnL | SHM7688_02932 | SHM7688_03007 | Aerobic respiration control sensor protein ArcB. | Nitrogen regulation protein NR(II). | 0.914 |
arcB_4 | luxQ_1 | SHM7688_02932 | SHM7688_00004 | Aerobic respiration control sensor protein ArcB. | Autoinducer 2 sensor kinase/phosphatase LuxQ. | 0.999 |
arcB_4 | luxQ_2 | SHM7688_02932 | SHM7688_00306 | Aerobic respiration control sensor protein ArcB. | Autoinducer 2 sensor kinase/phosphatase LuxQ. | 0.999 |
arcB_4 | luxQ_6 | SHM7688_02932 | SHM7688_01507 | Aerobic respiration control sensor protein ArcB. | Autoinducer 2 sensor kinase/phosphatase LuxQ. | 0.999 |
arcB_4 | luxQ_8 | SHM7688_02932 | SHM7688_02274 | Aerobic respiration control sensor protein ArcB. | Autoinducer 2 sensor kinase/phosphatase LuxQ. | 0.999 |
arcB_4 | rpfC_1 | SHM7688_02932 | SHM7688_01508 | Aerobic respiration control sensor protein ArcB. | Sensory/regulatory protein RpfC. | 0.999 |
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