STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH53590.1Leucine/isoleucine/valine transporter permease subunit; Belongs to the binding-protein-dependent transport system permease family. (327 aa)    
Predicted Functional Partners:
livH_6
LIV-I protein H; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
lptB_3
Lipopolysaccharide export system ATP-binding protein LptB.
 
  0.998
livF_6
LIV-I protein F.
 
  0.998
livH_2
LIV-I protein H; Belongs to the binding-protein-dependent transport system permease family.
 
 0.993
livH_7
LIV-I protein H; Belongs to the binding-protein-dependent transport system permease family.
 
 
  0.991
lptB_4
Lipopolysaccharide export system ATP-binding protein LptB.
 
  0.991
livH_3
LIV-I protein H; Belongs to the binding-protein-dependent transport system permease family.
 
 
  0.988
livH_5
LIV-I protein H; Belongs to the binding-protein-dependent transport system permease family.
 
 
  0.988
livF_7
LIV-I protein F.
 
  0.988
cysA_1
Sulfate/thiosulfate import ATP-binding protein CysA.
 
  0.987
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.