Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CUH52720.1 | eamB_1 | SHM7688_02167 | SHM7688_03132 | Site-specific recombinase XerD. | Cysteine/O-acetylserine efflux protein. | 0.421 |
| CUH53675.1 | cgtA | SHM7688_03131 | SHM7688_03130 | Hypothetical protein. | GTP-binding protein Obg; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 0.758 |
| CUH53675.1 | eamB_1 | SHM7688_03131 | SHM7688_03132 | Hypothetical protein. | Cysteine/O-acetylserine efflux protein. | 0.746 |
| CUH53675.1 | proA | SHM7688_03131 | SHM7688_03128 | Hypothetical protein. | Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family. | 0.667 |
| CUH53675.1 | proB | SHM7688_03131 | SHM7688_03129 | Hypothetical protein. | Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate. | 0.757 |
| CUH53675.1 | rplU | SHM7688_03131 | SHM7688_03134 | Hypothetical protein. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.691 |
| CUH53675.1 | rpmA | SHM7688_03131 | SHM7688_03133 | Hypothetical protein. | Hypothetical protein; RRP-L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.716 |
| cgtA | CUH53675.1 | SHM7688_03130 | SHM7688_03131 | GTP-binding protein Obg; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | Hypothetical protein. | 0.758 |
| cgtA | eamB_1 | SHM7688_03130 | SHM7688_03132 | GTP-binding protein Obg; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | Cysteine/O-acetylserine efflux protein. | 0.587 |
| cgtA | proA | SHM7688_03130 | SHM7688_03128 | GTP-binding protein Obg; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family. | 0.871 |
| cgtA | proB | SHM7688_03130 | SHM7688_03129 | GTP-binding protein Obg; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate. | 0.916 |
| cgtA | rplU | SHM7688_03130 | SHM7688_03134 | GTP-binding protein Obg; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.991 |
| cgtA | rpmA | SHM7688_03130 | SHM7688_03133 | GTP-binding protein Obg; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | Hypothetical protein; RRP-L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.985 |
| eamB_1 | CUH52720.1 | SHM7688_03132 | SHM7688_02167 | Cysteine/O-acetylserine efflux protein. | Site-specific recombinase XerD. | 0.421 |
| eamB_1 | CUH53675.1 | SHM7688_03132 | SHM7688_03131 | Cysteine/O-acetylserine efflux protein. | Hypothetical protein. | 0.746 |
| eamB_1 | cgtA | SHM7688_03132 | SHM7688_03130 | Cysteine/O-acetylserine efflux protein. | GTP-binding protein Obg; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 0.587 |
| eamB_1 | proA | SHM7688_03132 | SHM7688_03128 | Cysteine/O-acetylserine efflux protein. | Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family. | 0.443 |
| eamB_1 | proB | SHM7688_03132 | SHM7688_03129 | Cysteine/O-acetylserine efflux protein. | Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate. | 0.589 |
| eamB_1 | rhtB_2 | SHM7688_03132 | SHM7688_00661 | Cysteine/O-acetylserine efflux protein. | Homoserine/homoserine lactone efflux protein. | 0.436 |
| eamB_1 | rhtB_3 | SHM7688_03132 | SHM7688_02318 | Cysteine/O-acetylserine efflux protein. | Homoserine/homoserine lactone efflux protein. | 0.445 |
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