STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH53730.1Hypothetical protein. (47 aa)    
Predicted Functional Partners:
iscS
Cysteine desulfurase.
  
 
 0.994
sufB
FeS cluster assembly protein SufB.
     
 0.873
iscA
Iron-sulfur cluster assembly protein; Belongs to the HesB/IscA family.
  
  
 0.840
CUH53724.1
Hypothetical protein.
 
   
 0.809
sufD
FeS cluster assembly protein SufD.
 
   
 0.792
CUH54316.1
Dtr system oriT relaxase.
 
     0.783
CUH54044.1
Hypothetical protein.
  
     0.775
CUH52585.1
Membrane-bound metallopeptidase.
  
     0.772
dltC
D-alanine--poly(phosphoribitol) ligase subunit 2.
  
 
   0.772
CUH52985.1
Hypothetical protein.
 
     0.770
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.