Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
bfmBAB | eda | SHM7688_02923 | SHM7688_03606 | 2-oxoisovalerate dehydrogenase subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. | KHG/KDPG aldolase. | 0.909 |
bfmBAB | edd | SHM7688_02923 | SHM7688_03607 | 2-oxoisovalerate dehydrogenase subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. | Phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family. | 0.438 |
bfmBAB | eno | SHM7688_02923 | SHM7688_01412 | 2-oxoisovalerate dehydrogenase subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. | Enolase. | 0.832 |
bfmBAB | glk | SHM7688_02923 | SHM7688_01340 | 2-oxoisovalerate dehydrogenase subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. | Glucokinase; Belongs to the bacterial glucokinase family. | 0.500 |
bfmBAB | gnd | SHM7688_02923 | SHM7688_00316 | 2-oxoisovalerate dehydrogenase subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. | 6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. | 0.529 |
bfmBAB | pgi | SHM7688_02923 | SHM7688_03215 | 2-oxoisovalerate dehydrogenase subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. | Glucose-6-phosphate isomerase; Belongs to the GPI family. | 0.934 |
bfmBAB | pgl | SHM7688_02923 | SHM7688_03216 | 2-oxoisovalerate dehydrogenase subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. | 6-phosphogluconolactonase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate. | 0.700 |
bfmBAB | tal | SHM7688_02923 | SHM7688_03635 | 2-oxoisovalerate dehydrogenase subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. | Putative transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily. | 0.916 |
bfmBAB | tktA | SHM7688_02923 | SHM7688_02962 | 2-oxoisovalerate dehydrogenase subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. | Transketolase 1; Belongs to the transketolase family. | 0.941 |
bfmBAB | zwf_1 | SHM7688_02923 | SHM7688_03217 | 2-oxoisovalerate dehydrogenase subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. | Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone. | 0.790 |
eda | bfmBAB | SHM7688_03606 | SHM7688_02923 | KHG/KDPG aldolase. | 2-oxoisovalerate dehydrogenase subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. | 0.909 |
eda | edd | SHM7688_03606 | SHM7688_03607 | KHG/KDPG aldolase. | Phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family. | 0.999 |
eda | eno | SHM7688_03606 | SHM7688_01412 | KHG/KDPG aldolase. | Enolase. | 0.898 |
eda | glk | SHM7688_03606 | SHM7688_01340 | KHG/KDPG aldolase. | Glucokinase; Belongs to the bacterial glucokinase family. | 0.959 |
eda | pgi | SHM7688_03606 | SHM7688_03215 | KHG/KDPG aldolase. | Glucose-6-phosphate isomerase; Belongs to the GPI family. | 0.929 |
eda | pgl | SHM7688_03606 | SHM7688_03216 | KHG/KDPG aldolase. | 6-phosphogluconolactonase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate. | 0.809 |
eda | tal | SHM7688_03606 | SHM7688_03635 | KHG/KDPG aldolase. | Putative transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily. | 0.678 |
eda | zwf_1 | SHM7688_03606 | SHM7688_03217 | KHG/KDPG aldolase. | Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone. | 0.794 |
edd | bfmBAB | SHM7688_03607 | SHM7688_02923 | Phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family. | 2-oxoisovalerate dehydrogenase subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. | 0.438 |
edd | eda | SHM7688_03607 | SHM7688_03606 | Phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family. | KHG/KDPG aldolase. | 0.999 |
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