STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alkJ_2Alcohol dehydrogenase [acceptor]. (533 aa)    
Predicted Functional Partners:
CUH51267.1
Cytochrome c2.
  
 0.823
ankX
Phosphocholine transferase AnkX.
    
 0.742
CUH50820.1
Hypothetical protein.
    
 0.742
doxB
Naphthalene 1,2-dioxygenase subunit alpha.
    
 0.607
CUH52207.1
Adenylate and Guanylate cyclase catalytic domain protein.
   
  0.601
CUH52495.1
Putative protein containing caspase domain protein.
    
  0.601
CUH52499.1
Cellulose synthase subunit BcsC.
    
  0.601
CUH52671.1
Putative ATPase.
    
  0.601
CUH53287.1
Putative PEP-CTERM system TPR-repeat lipoprotein.
    
  0.601
CUH53866.1
Hypothetical protein.
    
  0.601
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.