STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gsiA_7Glutathione import ATP-binding protein GsiA; Belongs to the ABC transporter superfamily. (540 aa)    
Predicted Functional Partners:
gsiD_3
Glutathione transport system permease protein GsiD.
 
  0.995
ddpC
Putative D,D-dipeptide transport system permease protein DdpC.
 
  0.975
gsiD_2
Glutathione transport system permease protein GsiD.
 
  0.970
gsiD_1
Glutathione transport system permease protein GsiD.
 
  0.969
gsiC_3
Glutathione transport system permease protein GsiC.
 
 0.967
dppC_1
Dipeptide transport system permease protein DppC.
 
  0.957
yejE
Inner membrane ABC transporter permease protein YejE.
 
 0.904
yejB
Inner membrane ABC transporter permease protein YejB.
 
 0.836
dppC_2
Dipeptide transport system permease protein DppC.
 
  0.825
gsiC_2
Glutathione transport system permease protein GsiC.
 
 0.787
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.