STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
actP_5Acetate transporter ActP; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (595 aa)    
Predicted Functional Partners:
kdsD_3
Arabinose 5-phosphate isomerase KdsD.
 
  
 0.984
CUH54049.1
Putative solute:sodium symporter small subunit.
 
    0.967
CUH54052.1
Hypothetical protein.
 
    0.910
polC
DNA polymerase III PolC-type.
 
     0.841
acsA_1
Acetyl-coenzyme A synthetase.
  
  
 0.667
acsA_2
Acetyl-coenzyme A synthetase.
  
  
 0.667
acs
Acetyl-coenzyme A synthetase.
  
  
 0.654
adk_2
Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.
       0.549
maeB_1
NADP-dependent malic enzyme.
   
  
 0.426
maeB_2
NADP-dependent malic enzyme.
   
  
 0.426
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.