STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH54067.1Hypothetical protein. (99 aa)    
Predicted Functional Partners:
oprF_4
Outer membrane porin F precursor.
 
    
0.834
CUH54070.1
Hypothetical protein.
 
     0.828
CUH54163.1
Sporulation related domain protein.
  
     0.763
CUH52256.1
Hypothetical protein.
  
     0.746
CUH53974.1
Hypothetical protein.
  
     0.731
CUH50602.1
Hypothetical protein.
  
     0.730
CUH51104.1
Hypothetical protein.
  
     0.709
CUH53973.1
Hypothetical protein.
  
     0.693
CUH51107.1
Hypothetical protein.
  
     0.688
CUH52365.1
Hypothetical protein.
  
     0.669
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.