STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH54093.1Phosphonate degradation operons associated HDIG domain protein. (196 aa)    
Predicted Functional Partners:
CUH54092.1
Gamma-butyrobetaine dioxygenase.
     0.994
phnA
Phosphonoacetate hydrolase.
    0.957
gcvA_4
Gcv operon activator; Belongs to the LysR transcriptional regulatory family.
 
     0.651
CUH52565.1
Phytanoyl-CoA dioxygenase (PhyH).
 
  
  0.650
phnF
Putative transcriptional regulator PhnF.
  
    0.627
phnD_1
Phosphate-import protein PhnD precursor.
  
    0.577
phnD_2
Phosphate-import protein PhnD precursor.
  
    0.577
phnD_3
Phosphate-import protein PhnD precursor.
  
    0.577
lysDH
Lysine 6-dehydrogenase.
  
     0.493
phnJ
Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family.
  
    0.488
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.