STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH54164.1Hypothetical protein. (336 aa)    
Predicted Functional Partners:
CUH52585.1
Membrane-bound metallopeptidase.
  
     0.770
CUH54323.1
Rhomboid family protein.
  
     0.764
CUH54251.1
Hypothetical protein.
  
     0.759
CUH52985.1
Hypothetical protein.
  
     0.756
CUH53874.1
Hypothetical protein.
  
     0.750
CUH54044.1
Hypothetical protein.
  
     0.740
CUH53567.1
Hypothetical protein.
  
     0.739
CUH51008.1
Putative acetyltransferase.
  
     0.734
CUH53527.1
Hypothetical protein.
  
     0.730
CUH52811.1
Hypothetical protein.
  
     0.722
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.