STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH54202.1Antibiotic biosynthesis monooxygenase. (106 aa)    
Predicted Functional Partners:
uspF_2
Universal stress protein F.
 
     0.706
CUH51989.1
Sarcosine oxidase, delta subunit family.
   
    0.572
CUH54201.1
Hypothetical protein.
 
     0.565
CUH54204.1
Hypothetical protein.
       0.556
CUH54228.1
Hypothetical protein.
  
     0.555
CUH51491.1
TMAO reductase sytem sensor TorS.
  
     0.537
CUH53024.1
Hypothetical protein.
  
     0.496
CUH51873.1
Hypothetical protein.
  
     0.495
CUH53258.1
Hypothetical protein.
  
     0.490
CUH53155.1
Hypothetical protein.
  
     0.464
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.