STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH54242.1Hypothetical protein. (160 aa)    
Predicted Functional Partners:
CUH54241.1
Hydroxyacylglutathione hydrolase.
       0.854
mmgC_3
Acyl-CoA dehydrogenase.
 
     0.802
rimN
t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.
       0.644
ctaH
Cytochrome c oxidase subunit 4.
       0.615
CUH53964.1
Hypothetical protein.
  
     0.584
CUH52902.1
Hypothetical protein.
  
     0.555
CUH54244.1
Hypothetical protein.
       0.537
CUH52901.1
Hypothetical protein.
  
     0.441
CUH53567.1
Hypothetical protein.
  
     0.426
CUH51435.1
Hypothetical protein.
  
     0.425
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.