STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gcvA_6Gcv operon activator; Belongs to the LysR transcriptional regulatory family. (316 aa)    
Predicted Functional Partners:
yddG
Aromatic amino acid exporter YddG.
 
    0.807
dmlR_6
D-malate degradation protein R; Belongs to the LysR transcriptional regulatory family.
  
     0.632
benM_1
Ben and cat operon transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.605
benM_2
Ben and cat operon transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.575
CUH54261.1
Hypothetical protein.
       0.538
cmpR_2
HTH-type transcriptional activator CmpR; Belongs to the LysR transcriptional regulatory family.
  
     0.530
cynR_2
Cyn operon transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.472
gltC_2
HTH-type transcriptional regulator GltC; Belongs to the LysR transcriptional regulatory family.
  
     0.455
cmpR_3
HTH-type transcriptional activator CmpR; Belongs to the LysR transcriptional regulatory family.
  
     0.450
oxyR_2
Morphology and auto-aggregation control protein; Belongs to the LysR transcriptional regulatory family.
  
     0.446
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.