Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CUH52535.1 | CUH54288.1 | SHM7688_01982 | SHM7688_03758 | His-Xaa-Ser repeat protein HxsA. | Sulfite exporter TauE/SafE. | 0.455 |
CUH54287.1 | CUH54288.1 | SHM7688_03757 | SHM7688_03758 | Hypothetical protein. | Sulfite exporter TauE/SafE. | 0.547 |
CUH54287.1 | mdh | SHM7688_03757 | SHM7688_03756 | Hypothetical protein. | Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. | 0.478 |
CUH54288.1 | CUH52535.1 | SHM7688_03758 | SHM7688_01982 | Sulfite exporter TauE/SafE. | His-Xaa-Ser repeat protein HxsA. | 0.455 |
CUH54288.1 | CUH54287.1 | SHM7688_03758 | SHM7688_03757 | Sulfite exporter TauE/SafE. | Hypothetical protein. | 0.547 |
CUH54288.1 | mdh | SHM7688_03758 | SHM7688_03756 | Sulfite exporter TauE/SafE. | Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. | 0.583 |
CUH54288.1 | rbsK | SHM7688_03758 | SHM7688_00918 | Sulfite exporter TauE/SafE. | Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. | 0.539 |
mdh | CUH54287.1 | SHM7688_03756 | SHM7688_03757 | Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. | Hypothetical protein. | 0.478 |
mdh | CUH54288.1 | SHM7688_03756 | SHM7688_03758 | Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. | Sulfite exporter TauE/SafE. | 0.583 |
rbsK | CUH54288.1 | SHM7688_00918 | SHM7688_03758 | Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. | Sulfite exporter TauE/SafE. | 0.539 |