STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH54306.1Hypothetical protein. (573 aa)    
Predicted Functional Partners:
rpfC_1
Sensory/regulatory protein RpfC.
     
 0.674
luxQ_8
Autoinducer 2 sensor kinase/phosphatase LuxQ.
     
 0.657
luxQ_2
Autoinducer 2 sensor kinase/phosphatase LuxQ.
     
 0.644
sigW_1
Sigma-W factor; Belongs to the sigma-70 factor family. ECF subfamily.
    
   0.615
CUH53122.1
Transferrin binding protein-like solute binding protein.
    
   0.615
sigW_2
Sigma-W factor; Belongs to the sigma-70 factor family. ECF subfamily.
    
   0.615
CUH54176.1
Transferrin binding protein-like solute binding protein.
    
   0.615
sigK
Sigma-K factor; Belongs to the sigma-70 factor family. ECF subfamily.
    
   0.615
arcB_2
Aerobic respiration control sensor protein ArcB.
     
 0.614
CUH52499.1
Cellulose synthase subunit BcsC.
     
 0.559
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.