STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rutR_2Rut operon repressor. (205 aa)    
Predicted Functional Partners:
amaB
N-carbamoyl-L-amino acid hydrolase.
 
     0.681
rutR_3
Rut operon repressor.
 
    
0.604
CUH54405.1
Putative thiamine biosynthesis protein.
 
     0.584
dht
D-hydantoinase/dihydropyrimidinase.
 
     0.557
tauB_2
Taurine import ATP-binding protein TauB.
  
     0.494
luxQ_6
Autoinducer 2 sensor kinase/phosphatase LuxQ.
    
 
 0.454
CUH54394.1
Hypothetical protein.
       0.445
luxQ_2
Autoinducer 2 sensor kinase/phosphatase LuxQ.
    
 
 0.425
ssuC_4
Putative aliphatic sulfonates transport permease protein SsuC.
  
     0.405
preA_2
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA.
  
     0.403
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.