Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CUH51670.1 | CUH51674.1 | SHM7688_01109 | SHM7688_01113 | Hypothetical protein. | Hypothetical protein. | 0.768 |
CUH51670.1 | CUH51681.1 | SHM7688_01109 | SHM7688_01120 | Hypothetical protein. | P-type DNA transfer protein VirB5. | 0.765 |
CUH51670.1 | CUH51691.1 | SHM7688_01109 | SHM7688_01130 | Hypothetical protein. | Type IV secretion system T-DNA border endonuclease VirD2. | 0.766 |
CUH51670.1 | CUH51692.1 | SHM7688_01109 | SHM7688_01131 | Hypothetical protein. | Hypothetical protein. | 0.764 |
CUH51670.1 | CUH52693.1 | SHM7688_01109 | SHM7688_02140 | Hypothetical protein. | Type IV secretion system T-DNA border endonuclease VirD2. | 0.762 |
CUH51670.1 | CUH52694.1 | SHM7688_01109 | SHM7688_02141 | Hypothetical protein. | Bacterial mobilisation protein (MobC). | 0.765 |
CUH51670.1 | CUH54436.1 | SHM7688_01109 | SHM7688_03907 | Hypothetical protein. | Site-specific tyrosine recombinase XerC; Belongs to the 'phage' integrase family. | 0.718 |
CUH51674.1 | CUH51670.1 | SHM7688_01113 | SHM7688_01109 | Hypothetical protein. | Hypothetical protein. | 0.768 |
CUH51674.1 | CUH51681.1 | SHM7688_01113 | SHM7688_01120 | Hypothetical protein. | P-type DNA transfer protein VirB5. | 0.843 |
CUH51674.1 | CUH51691.1 | SHM7688_01113 | SHM7688_01130 | Hypothetical protein. | Type IV secretion system T-DNA border endonuclease VirD2. | 0.761 |
CUH51674.1 | CUH51692.1 | SHM7688_01113 | SHM7688_01131 | Hypothetical protein. | Hypothetical protein. | 0.748 |
CUH51674.1 | CUH52693.1 | SHM7688_01113 | SHM7688_02140 | Hypothetical protein. | Type IV secretion system T-DNA border endonuclease VirD2. | 0.739 |
CUH51674.1 | CUH52694.1 | SHM7688_01113 | SHM7688_02141 | Hypothetical protein. | Bacterial mobilisation protein (MobC). | 0.749 |
CUH51674.1 | CUH54436.1 | SHM7688_01113 | SHM7688_03907 | Hypothetical protein. | Site-specific tyrosine recombinase XerC; Belongs to the 'phage' integrase family. | 0.717 |
CUH51674.1 | CUH54440.1 | SHM7688_01113 | SHM7688_03911 | Hypothetical protein. | Hypothetical protein. | 0.761 |
CUH51681.1 | CUH51670.1 | SHM7688_01120 | SHM7688_01109 | P-type DNA transfer protein VirB5. | Hypothetical protein. | 0.765 |
CUH51681.1 | CUH51674.1 | SHM7688_01120 | SHM7688_01113 | P-type DNA transfer protein VirB5. | Hypothetical protein. | 0.843 |
CUH51681.1 | CUH51691.1 | SHM7688_01120 | SHM7688_01130 | P-type DNA transfer protein VirB5. | Type IV secretion system T-DNA border endonuclease VirD2. | 0.775 |
CUH51681.1 | CUH51692.1 | SHM7688_01120 | SHM7688_01131 | P-type DNA transfer protein VirB5. | Hypothetical protein. | 0.775 |
CUH51681.1 | CUH52693.1 | SHM7688_01120 | SHM7688_02140 | P-type DNA transfer protein VirB5. | Type IV secretion system T-DNA border endonuclease VirD2. | 0.775 |
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