CYA_0028 protein (Synechococcus sp. JA33Ab) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CYA_0028

Putative mannose-6-phosphate isomerase; Identified by match to protein family HMM PF01050; match to protein family HMM PF07883. (150 aa)

Predicted Functional Partners:

pgi

0.911

fbp

0.905

glmS

0.904

CYA_0402

0.902

CYA_2501

0.901

glpX

0.900

CYA_0270

0.783

CYA_0239

0.771

CYA_0027

0.538

CYA_0026

0.438

Your Current Organism:

Synechococcus sp. JA33Ab

NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CYA_0026	CYA_0027	CYA_0026	CYA_0027	Identified by match to protein family HMM PF04932.	Ferredoxin, 2Fe-2S; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.	0.497
CYA_0026	CYA_0028	CYA_0026	CYA_0028	Identified by match to protein family HMM PF04932.	Putative mannose-6-phosphate isomerase; Identified by match to protein family HMM PF01050; match to protein family HMM PF07883.	0.438
CYA_0026	CYA_0239	CYA_0026	CYA_0239	Identified by match to protein family HMM PF04932.	Bacterial sugar transferase family protein; Identified by match to protein family HMM PF02397.	0.778
CYA_0027	CYA_0026	CYA_0027	CYA_0026	Ferredoxin, 2Fe-2S; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.	Identified by match to protein family HMM PF04932.	0.497
CYA_0027	CYA_0028	CYA_0027	CYA_0028	Ferredoxin, 2Fe-2S; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.	Putative mannose-6-phosphate isomerase; Identified by match to protein family HMM PF01050; match to protein family HMM PF07883.	0.538
CYA_0028	CYA_0026	CYA_0028	CYA_0026	Putative mannose-6-phosphate isomerase; Identified by match to protein family HMM PF01050; match to protein family HMM PF07883.	Identified by match to protein family HMM PF04932.	0.438
CYA_0028	CYA_0027	CYA_0028	CYA_0027	Putative mannose-6-phosphate isomerase; Identified by match to protein family HMM PF01050; match to protein family HMM PF07883.	Ferredoxin, 2Fe-2S; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.	0.538
CYA_0028	CYA_0239	CYA_0028	CYA_0239	Putative mannose-6-phosphate isomerase; Identified by match to protein family HMM PF01050; match to protein family HMM PF07883.	Bacterial sugar transferase family protein; Identified by match to protein family HMM PF02397.	0.771
CYA_0028	CYA_0270	CYA_0028	CYA_0270	Putative mannose-6-phosphate isomerase; Identified by match to protein family HMM PF01050; match to protein family HMM PF07883.	Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.	0.783
CYA_0028	CYA_0402	CYA_0028	CYA_0402	Putative mannose-6-phosphate isomerase; Identified by match to protein family HMM PF01050; match to protein family HMM PF07883.	Kinase, pfkB family; Identified by match to protein family HMM PF00294.	0.902
CYA_0028	CYA_2501	CYA_0028	CYA_2501	Putative mannose-6-phosphate isomerase; Identified by match to protein family HMM PF01050; match to protein family HMM PF07883.	Identified by match to protein family HMM PF01050; match to protein family HMM PF07883.	0.901
CYA_0028	fbp	CYA_0028	CYA_1698	Putative mannose-6-phosphate isomerase; Identified by match to protein family HMM PF01050; match to protein family HMM PF07883.	Fructose-1,6-bisphosphatase; Identified by match to protein family HMM PF00316.	0.905
CYA_0028	glmS	CYA_0028	CYA_1543	Putative mannose-6-phosphate isomerase; Identified by match to protein family HMM PF01050; match to protein family HMM PF07883.	Glucosamine--fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.	0.904
CYA_0028	glpX	CYA_0028	CYA_0542	Putative mannose-6-phosphate isomerase; Identified by match to protein family HMM PF01050; match to protein family HMM PF07883.	Fructose-1,6-bisphosphatase, class II; Catalyzes the hydrolysis of fructose 1,6-bisphosphate (Fru 1,6-P2) and sedoheptulose 1,7-bisphosphate (Sed 1,7-P2) to fructose 6- phosphate and sedoheptulose 7-phosphate, respectively; Belongs to the FBPase class 2 family.	0.900
CYA_0028	pgi	CYA_0028	CYA_0387	Putative mannose-6-phosphate isomerase; Identified by match to protein family HMM PF01050; match to protein family HMM PF07883.	Glucose-6-phosphate isomerase; Identified by match to protein family HMM PF00342.	0.911
CYA_0239	CYA_0026	CYA_0239	CYA_0026	Bacterial sugar transferase family protein; Identified by match to protein family HMM PF02397.	Identified by match to protein family HMM PF04932.	0.778
CYA_0239	CYA_0028	CYA_0239	CYA_0028	Bacterial sugar transferase family protein; Identified by match to protein family HMM PF02397.	Putative mannose-6-phosphate isomerase; Identified by match to protein family HMM PF01050; match to protein family HMM PF07883.	0.771
CYA_0239	CYA_0270	CYA_0239	CYA_0270	Bacterial sugar transferase family protein; Identified by match to protein family HMM PF02397.	Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.	0.773
CYA_0239	CYA_2501	CYA_0239	CYA_2501	Bacterial sugar transferase family protein; Identified by match to protein family HMM PF02397.	Identified by match to protein family HMM PF01050; match to protein family HMM PF07883.	0.771
CYA_0239	glmS	CYA_0239	CYA_1543	Bacterial sugar transferase family protein; Identified by match to protein family HMM PF02397.	Glucosamine--fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.	0.679

page 1 of 3

Server load: low (12%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About