Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
selDSelenide, water dikinase; Synthesizes selenophosphate from selenide and ATP. (352 aa)    
Predicted Functional Partners:
trxB
Thioredoxin-disulfide reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF00085; match to protein family HMM PF07992; match to protein family HMM TIGR01292.
     
 0.936
CYA_0391
Cysteine desulfurase, SufS family; Identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR01979; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
    
 0.909
CYA_1528
Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF01266; match to protein family HMM PF07992.
     
 0.908
ybbB
YbbB protein; Identified by similarity to SP:P33667.
 
   
 0.847
nifS
Cysteine desulfurase; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
  
 
 0.715
CYA_2891
Aminotransferase, class V; Identified by similarity to OMNI:NT01MC1419; match to protein family HMM PF00266; match to protein family HMM PF01212.
  
 
 0.679
dnaE
DNA polymerase III, alpha subunit; Identified by similarity to SP:O34623; match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594.
       0.538
CYA_0053
ISSoc4, transposase orfAB; Identified by similarity to GB:AAC97588.1.
       0.473
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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