Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
CYA_0060Conserved hypothetical protein. (247 aa)    
Predicted Functional Partners:
CYA_0061
RNA polymerase sigma-70 factor family; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.934
CYA_2233
RNA polymerase sigma factor, ECF family; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR01199; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.638
CYA_0102
Conserved hypothetical protein.
  
     0.565
CYA_2111
Ferric iron uptake ABC transporter (FeT) family, permease protein; Identified by match to protein family HMM PF00528.
  
  
 0.550
CYA_2783
Ferric iron uptake ABC transporter (FeT) family, permease protein; Identified by match to protein family HMM PF00528.
  
  
 0.550
CYA_0533
Conserved hypothetical protein; Identified by similarity to PIR:S75241.
  
     0.491
nrdJ
Ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent, intein-contatining; Identified by match to protein family HMM TIGR01443; match to protein family HMM TIGR01445; match to protein family HMM TIGR02505.
  
     0.461
CYA_0062
Putative lipoprotein.
  
    0.434
CYA_0059
Conserved hypothetical protein.
       0.430
CYA_0367
Identified by match to protein family HMM PF00903.
  
    0.423
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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