Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CYA_0089Conserved hypothetical protein; Identified by similarity to GB:BAC92187.1. (206 aa)    
Predicted Functional Partners:
CYA_0676
Conserved hypothetical protein; Identified by similarity to PIR:AG2305.
  
     0.770
CYA_2396
Conserved hypothetical protein.
  
     0.770
CYA_0497
Conserved hypothetical protein.
  
     0.769
CYA_0454
Identified by match to protein family HMM TIGR02652.
  
     0.751
CYA_1307
Conserved hypothetical protein.
  
     0.751
CYA_1833
Identified by match to protein family HMM PF06967.
  
     0.747
CYA_1066
Conserved hypothetical protein; Identified by similarity to PIR:AD2089.
  
     0.742
CYA_0898
Identified by match to protein family HMM PF06967.
  
     0.741
CYA_2661
Conserved hypothetical protein.
  
     0.737
CYA_0214
Conserved hypothetical protein.
  
     0.736
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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