Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CYA_0116Conserved hypothetical protein; Identified by similarity to PIR:S76405; match to protein family HMM PF07466. (307 aa)    
Predicted Functional Partners:
CYA_1001
Conserved hypothetical protein; Identified by similarity to PIR:AE2255.
  
     0.704
CYA_0185
Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494.
  
     0.674
CYA_0396
Conserved hypothetical protein; Identified by similarity to GB:BAC89907.1.
  
     0.670
CYA_1402
Conserved hypothetical protein.
  
     0.650
thf1
Conserved hypothetical protein; May be involved in photosynthetic membrane biogenesis.
  
     0.603
CYA_0115
Hypothetical protein; Identified by Glimmer2; putative.
       0.592
CYA_0926
ParB nuclease domain protein; Identified by match to protein family HMM PF02195.
  
     0.592
psbP
Photosystem II oxygen evolving complex protein PsbP.
  
     0.592
CYA_2406
Conserved hypothetical protein; Identified by similarity to GB:BAC88790.1; match to protein family HMM PF06799.
  
     0.590
CYA_0694
Conserved hypothetical protein.
  
     0.589
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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